BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB015F10LP1|AL426887
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig276 1578 0.0
>3x_Contig276
Length = 1075
Score = 1578 bits (795), Expect = 0.0
Identities = 818/823 (99%), Gaps = 3/823 (0%)
Strand = Plus / Plus
Query: 73 cccattgtactcctttgcagcttgctgagcggattctaacaaagcagaaagaccattgtt 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cccattgtactcctttgcagcttgctgagcggattctaacaaagcagaaagaccattgtt 60
Query: 133 gccgtcgttttcatcttcatccatagattcatcgtcatcaccaacatcttcacctagttc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccgtcgttttcatcttcatccatagattcatcgtcatcaccaacatcttcacctagttc 120
Query: 193 acgagttcttctcttagcctctaacctttcctgctttctacgttctttctcctccaaatc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acgagttcttctcttagcctctaacctttcctgctttctacgttctttctcctccaaatc 180
Query: 253 agttcttctcttcgcttcaatctcttcgatgatcctgttcttgtacgggaaattggccgg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agttcttctcttcgcttcaatctcttcgatgatcctgttcttgtacgggaaattggccgg 240
Query: 313 aatacctggatccttactcttattggatttccatgtcacatccttcttagcaagtttccg 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatacctggatccttactcttattggatttccatgtcacatccttcttagcaagtttccg 300
Query: 373 ctctttcctatgttgagcagcagccttcttcttgataccctccttcatacgagtggaagt 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctctttcctatgttgagcagcagccttcttcttgataccctccttcatacgagtggaagt 360
Query: 433 tctcttggaagttctctttcttactctcaccatctcttttgattaatggaaaaaggtata 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tctcttggaagttctctttcttactctcaccatctcttttgattaatggaaaaaggtata 420
Query: 493 tttactgcactggattatagatatcttagctgttccggtgaacttatcacggaaaacagt 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tttactgcactggattatagatatcttagctgttccggtgaacttatcacggaaaacagt 480
Query: 553 actgaaacatctacttgaacaggtgttctgtaaatatcaagtctcatctcatctcatctc 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 actgaaacatctacttgaacaggtgttctgtaaatatcaagtctcatctcatctcatctc 540
Query: 613 atctcatcgcaggttttaacatatttcgaagagctgaaaaatttcaaagtagaaaagaat 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atctcatcgcaggttttaacatatttcgaagagctgaaaaatttcaaagtagaaaagaat 600
Query: 673 ttctttttgctggcggacgacagtkgaaacacagtggatactcgtcaattacgaggcaat 732
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 601 ttctttttgctggcggacgacagtggaaacacagtggatactcgtcaattacgaggcaat 660
Query: 733 cttatgctactcgcaagccataatttgtgtcaataatatttgggacgtatttggtatatc 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cttatgctactcgcaagccataatttgtgtcaataatatttgggacgtatttggtatatc 720
Query: 793 tatgagcacttccaggcagatatttaacattatatatacagtaataccgtcaagggcagt 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tatgagcacttccaggcagatatttaacattatatatacagtaataccgtcaagggcagt 780
Query: 853 g-aamtgtcagtacatat-aaggcag-ccagtagccgttgcgc 892
| || ||||||||||||| ||||||| ||||||||||||||||
Sbjct: 781 gaaactgtcagtacatataaaggcagcccagtagccgttgcgc 823
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8607
Number of Sequences: 1807
Number of extensions: 8607
Number of successful extensions: 674
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)